Color Mappings

Trackhub Tissue and Organ Colors

Color	Organ	RGB Code
	Adipose	rgb(255,119,39)
	Adrenal_Gland	rgb(108,213,81)
	B_cell	rgb(254,75,173)
	Bladder	rgb(194,33,39)
	Blood	rgb(254,75,173)
	Blood_Vessel	rgb(255,37,41)
	Bone	rgb(162,196,201)
	Bone_marrow	rgb(234,153,153)
	Brain	rgb(255,255,31)
	Breast	rgb(85,223,226)
	Cervix_Uteri	rgb(233,195,240)
	Colon	rgb(232,174,97)
	Connective_tissue	rgb(172,168,211)
	Embryo	rgb(147,196,125)
	Epithelium	rgb(221,126,107)
	Esophagus	rgb(159,131,100)
	Eye	rgb(213,166,189)
	Fallopian_Tube	rgb(255,234,233)
	Gallbladder	rgb(103,78,167)
	Heart	rgb(116,50,165)
	Kidney	rgb(133,232,221)
	Large_intestine	rgb(86,86,36)
	Limb	rgb(95,88,237)
	Liver	rgb(195,215,117)
	Lung	rgb(188,235,65)
	Muscle	rgb(196,193,243)
	Nerve	rgb(255,248,0)
	Nose	rgb(181,131,79)
	Ovary	rgb(255,200,239)
	Pancreas	rgb(175,100,41)
	Penis	rgb(20,74,159)
	Pituitary	rgb(205,248,164)
	Placenta	rgb(123,203,84)
	Prostate	rgb(221,221,221)
	Salivary_Gland	rgb(175,215,157)
	Skin	rgb(127,133,209)
	Small_Intestine	rgb(98,98,41)
	Spleen	rgb(136,157,97)
	Stomach	rgb(255,254,175)
	Testis	rgb(195,196,196)
	Thymus	rgb(142,124,195)
	Thyroid	rgb(27,119,58)
	Trachea	rgb(194,123,160)
	Uterus	rgb(230,138,204)
	Vagina	rgb(255,101,174)

JSON

tissue-colormap.json

{
  "Adipose": "rgb(255,119,39)",
  "Adrenal_Gland": "rgb(108,213,81)",
  "B_cell": "rgb(254,75,173)",
  "Bladder": "rgb(194,33,39)",
  "Blood": "rgb(254,75,173)",
  "Blood_Vessel": "rgb(255,37,41)",
  "Bone": "rgb(162,196,201)",
  "Bone_marrow": "rgb(234,153,153)",
  "Brain": "rgb(255,255,31)",
  "Breast": "rgb(85,223,226)",
  "Cervix_Uteri": "rgb(233,195,240)",
  "Colon": "rgb(232,174,97)",
  "Connective_tissue": "rgb(172,168,211)",
  "Embryo": "rgb(147,196,125)",
  "Epithelium": "rgb(221,126,107)",
  "Esophagus": "rgb(159,131,100)",
  "Eye": "rgb(213,166,189)",
  "Fallopian_Tube": "rgb(255,234,233)",
  "Gallbladder": "rgb(103,78,167)",
  "Heart": "rgb(116,50,165)",
  "Kidney": "rgb(133,232,221)",
  "Large_intestine": "rgb(86,86,36)",
  "Limb": "rgb(95,88,237)",
  "Liver": "rgb(195,215,117)",
  "Lung": "rgb(188,235,65)",
  "Muscle": "rgb(196,193,243)",
  "Nerve": "rgb(255,248,0)",
  "Nose": "rgb(181,131,79)",
  "Ovary": "rgb(255,200,239)",
  "Pancreas": "rgb(175,100,41)",
  "Penis": "rgb(20,74,159)",
  "Pituitary": "rgb(205,248,164)",
  "Placenta": "rgb(123,203,84)",
  "Prostate": "rgb(221,221,221)",
  "Salivary_Gland": "rgb(175,215,157)",
  "Skin": "rgb(127,133,209)",
  "Small_Intestine": "rgb(98,98,41)",
  "Spleen": "rgb(136,157,97)",
  "Stomach": "rgb(255,254,175)",
  "Testis": "rgb(195,196,196)",
  "Thymus": "rgb(142,124,195)",
  "Thyroid": "rgb(27,119,58)",
  "Trachea": "rgb(194,123,160)",
  "Uterus": "rgb(230,138,204)",
  "Vagina": "rgb(255,101,174)"
}

PsychSCREEN

Developmental Stage

Color	Category	Code
	Adult-specific	#ff0000
	Fetal-specific	#92D050
	Fetal and adult	#3D85C6

NeuN Status

Color	Category	Code
	NeuN+ only	#6D6E71
	NeuN- only	#8856A7
	NeuN+ and NeuN-	#3E85C6

Brain vs Non-brain

Color	Category	Code
	Brain	#ED1C24
	non-brain	#3B4A93

Brain Spatial - dlPFC Layers

Color	Layer	Code
	White Matter (WM)	#1b1b1b
	Layer 6 (L6)	#ef8c28
	Layer 5 (L5)	#f7dc38
	Layer 4 (L4)	#914ea1
	Layer 3 (L3)	#62ae52
	Layer 2 (L2)	#4c79b4
	Layer 1 (L1)	#df367e

Hippocampus - Manual Annotations

Color	Region	Code
	GCL (granule cell layer)	#006000
	CA4	#bdc720
	PCL-CA3	#00ab00
	PCL-CA1	#00dd00
	SUB (subiculum)	#bad8a5
	CTX (cortex)	#a6fba9
	THAL (thalamus)	#2941ff
	SL (stratum lucidum)	#565656
	SO (stratum oriens)	#b5a9bc
	SR (stratum radiatum)	#949f96
	ML	#cccccc
	SLM (stratum lacunosum-moleculare)	#9e6d38
	SGZ (subgranular zone)	#e6b481
	WM (white matter)	#ff64fd
	CP (choroid plexus)	#01137d

Hippocampus - Broad PRECAST

Color	Category	Code
	Neuron	#1a9b6d
	Neuropil	#a4957a
	Vasc CSF	#3254d1
	WM	#c24fc4

GTEx Tissues (Official)

Granular Categories

Color	Tissue	RGB Code
	Adipose-Subcutaneous	rgb(242,104,34)
	Adipose-Visceral-(Omentum)	rgb(251,169,26)
	Adrenal-Gland	rgb(94,186,71)
	Artery-Aorta	rgb(241,88,89)
	Artery-Coronary	rgb(248,167,153)
	Artery-Tibial	rgb(238,33,36)
	Bladder	rgb(169,29,34)
	Brain-Amygdala	rgb(235,231,27)
	Brain-Anterior-cingulate-cortex-(BA24)	rgb(235,231,27)
	Brain-Caudate-(basal-ganglia)	rgb(235,231,27)
	Brain-Cerebellar-Hemisphere	rgb(235,231,27)
	Brain-Cerebellum	rgb(235,231,27)
	Brain-Cortex	rgb(235,231,27)
	Brain-Frontal-Cortex-(BA9)	rgb(235,231,27)
	Brain-Hippocampus	rgb(235,231,27)
	Brain-Hypothalamus	rgb(235,231,27)
	Brain-Nucleus-accumbens-(basal-ganglia)	rgb(235,231,27)
	Brain-Putamen-(basal-ganglia)	rgb(235,231,27)
	Brain-Spinal-cord-(cervical-c-1)	rgb(235,231,27)
	Brain-Substantia-nigra	rgb(235,231,27)
	Breast-Mammary-Tissue	rgb(74,194,197)
	Cells-Cultured-fibroblasts	rgb(177,226,244)
	Cells-EBV-transformed-lymphocytes	rgb(163,114,177)
	Cervix-Ectocervix	rgb(252,204,203)
	Cervix-Endocervix	rgb(203,170,209)
	Colon-Sigmoid	rgb(238,187,119)
	Colon-Transverse	rgb(202,152,85)
	Esophagus-Gastroesophageal-Junction	rgb(139,114,87)
	Esophagus-Mucosa	rgb(82,38,14)
	Esophagus-Muscularis	rgb(187,153,136)
	Fallopian-Tube	rgb(252,204,203)
	Heart-Atrial-Appendage	rgb(122,82,161)
	Heart-Left-Ventricle	rgb(101,44,144)
	Kidney-Cortex	rgb(116,202,193)
	Kidney-Medulla	rgb(121,200,171)
	Liver	rgb(170,187,102)
	Lung	rgb(164,205,57)
	Minor-Salivary-Gland	rgb(153,187,137)
	Muscle-Skeletal	rgb(171,168,212)
	Nerve-Tibial	rgb(253,216,0)
	Ovary	rgb(225,174,208)
	Pancreas	rgb(153,87,36)
	Pituitary	rgb(179,216,143)
	Prostate	rgb(221,221,221)
	Skin-Not-Sun-Exposed-(Suprapubic)	rgb(58,83,164)
	Skin-Sun-Exposed-(Lower-leg)	rgb(111,116,182)
	Small-Intestine-Terminal-Ileum	rgb(86,86,36)
	Spleen	rgb(119,137,85)
	Stomach	rgb(255,221,153)
	Testis	rgb(170,171,171)
	Thyroid	rgb(24,104,51)
	Uterus	rgb(200,120,178)
	Vagina	rgb(239,88,152)
	Whole-Blood	rgb(221,66,151)
	Parathyroid Gland	rgb(7,65,27)

Broad Categories

Color	Tissue	RGB Code
	adipose tissue	rgb(242,104,34)
	adrenal gland	rgb(94,186,71)
	bladder	rgb(169,29,34)
	blood	rgb(221,66,151)
	blood vessel	rgb(238,33,36)
	brain	rgb(235,231,27)
	breast	rgb(74,194,197)
	cervix	rgb(203,170,209)
	colon	rgb(202,152,85)
	esophagus	rgb(139,114,87)
	fallopian tube	rgb(252,204,203)
	heart	rgb(101,44,144)
	kidney	rgb(116,202,193)
	liver	rgb(170,187,102)
	lung	rgb(164,205,57)
	muscle	rgb(171,168,212)
	nerve	rgb(253,216,0)
	ovary	rgb(225,174,208)
	pancreas	rgb(153,87,36)
	pituitary	rgb(179,216,143)
	prostate	rgb(221,221,221)
	salivary gland	rgb(153,187,137)
	skin	rgb(111,116,182)
	small intestine	rgb(86,86,36)
	spleen	rgb(119,137,85)
	stomach	rgb(255,221,153)
	testis	rgb(170,171,171)
	thyroid	rgb(24,104,51)
	uterus	rgb(200,120,178)
	vagina	rgb(239,88,152)
	epithelium	#dd7e6b
	bone	#a2c4c9
	eye	#d5a6bd
	bone marrow	#ea9999
	embryo	#93c47d
	penis	#144a9f
	nose	#b5834f
	connective tissue	#aca8d3
	gallbladder	#674ea7
	placenta	#7bcb54
	limb	#5f58ed
	intestine	#565624
	trachea	#c27ba0
	thymus	#8e7cc3

Single-cell (26 Tissues)

Color	Cell Type	RGB Code
	Enteroendocrine	rgb(183,72,29)
	Acinar cell	rgb(225,109,63)
	Chromaffin cell	rgb(245,130,49)
	Crypt cell	rgb(248,167,110)
	Ductal cell	rgb(235,159,129)
	Follicular cell	rgb(246,211,197)
	Adipocyte	rgb(255,225,25)
	Macrophage	rgb(240,107,95)
	Alveolar macrophage	rgb(237,71,56)
	B lymphocyte	rgb(165,49,39)
	T lymphocyte	rgb(103,31,24)
	Basal epithelial cell	rgb(124,158,227)
	Epithelial cell	rgb(61,111,214)
	Luminal epithelial cell	rgb(52,75,121)
	Endothelial	rgb(124,210,227)
	Foveolar cell	rgb(166,147,195)
	Enteric glia cell	rgb(153,114,214)
	Enterocyte	rgb(111,57,195)
	Gastric chief cell	rgb(77,40,136)
	Goblet cell	rgb(125,40,136)
	Gastric parietal cell	rgb(80,25,86)
	Hepatic stellate cell	rgb(117,26,56)
	Hepatocyte	rgb(177,126,143)
	Granulosa cell	rgb(191,239,69)
	Microfold cell	rgb(133,167,48)
	Stem cell	rgb(170,255,195)
	Paneth cell	rgb(69,255,123)
	Type II pneumocyte	rgb(109,145,119)
	Mesothelial cell	rgb(68,102,78)
	Intersitial cell	rgb(25,86,80)
	Schwann cell	rgb(138,210,147)
	Neuroblast	rgb(60,180,75)
	Fibroblast	rgb(240,50,135)
	Mast cell	rgb(192,40,108)
	Myoblast	rgb(194,161,123)
	Myofibroblast	rgb(178,136,88)
	Myosatellite cell	rgb(130,97,60)
	Cardiomyocyte	rgb(154,99,36)
	Smooth muscle cell	rgb(107,69,25)
	Vascular smooth muscle cell	rgb(77,64,49)
	Type I skeletal myocyte	rgb(192,194,123)
	Unknown	rgb(169,169,169)

Single-cell (Brain)

Color	Cell Type	RGB Code
	Excitatory neurons (Ex)	rgb(227,26,28)
	Inhibitory neurons (In)	rgb(31,120,180)
	Dopaminergic neurons (DaN)	rgb(251,154,153)
	GABAergic neurons (GABA)	rgb(166,206,227)
	Neurons (Neu)	rgb(202,178,214)
	Astrocytes (Ast)	rgb(51,160,44)
	Microglia (Mic)	rgb(199,233,192)
	Oligodendrocytes (Oli)	rgb(255,127,0)
	Oligodendrocyte precursors (OPC)	rgb(255,217,47)
	Endothelial (Endo)	rgb(177,89,40)

Mixed Cell Types

Color	Cell Type Mix	RGB Code
	Oli/OPC	rgb(230,171,2)
	In/OPC	rgb(102,194,165)
	Ast/Oli	rgb(253,191,111)
	Ast/Mic	rgb(166,216,84)
	Ast/Mic/Oli	rgb(102,102,102)
	Ast/Neu/Oli	rgb(179,179,179)

Tissues

Color	Tissue	RGB Code
	Forebrain	rgb(148,197,159)
	Midbrain	rgb(101,176,105)
	Hindbrain	rgb(60,130,80)
	Neural Tube	rgb(22,59,21)
	Heart	rgb(212,55,131)
	Liver	rgb(235,51,35)
	Lung	rgb(126,81,36)
	Kidney	rgb(221,196,251)
	Stomach	rgb(170,127,238)
	Intestine	rgb(121,92,166)
	Limb	rgb(37,94,209)
	Facial	rgb(163,194,250)

Mouse Embryonic Tissues

Color	Tissue	RGB Code
	Forebrain	rgb(148,197,159)
	Midbrain	rgb(101,176,105)
	Hindbrain	rgb(60,130,80)
	Neural Tube	rgb(22,59,21)
	Heart	rgb(212,55,131)
	Liver	rgb(235,51,35)
	Lung	rgb(126,81,36)
	Kidney	rgb(221,196,251)
	Stomach	rgb(170,127,238)
	Intestine	rgb(121,92,166)
	Limb	rgb(37,94,209)
	Embryonic Facial Prominence	rgb(163,194,250)

cCRE Groups (SCREEN 2019)

Color	Category	RGB Code
	PLS (Promoter-like)	rgb(255,0,0)
	pELS (proximal Enhancer-like)	rgb(255,167,0)
	dELS (distal Enhancer-like)	rgb(255,205,0)
	DNase-H3K4me3	rgb(255,170,170)
	CTCF-only	rgb(0,176,240)
	DNase-only	rgb(6,218,147)
	Low DNase / Inactive	rgb(225,225,225)
	Unclassified	rgb(140,140,140)

V3/V4 cCRE Colors

Color	Category	RGB Code
	PLS	rgb(255,0,0)
	pELS	rgb(255,167,0)
	dELS	rgb(255,205,0)
	CA-H3K4me3	rgb(255,170,170)
	CA-CTCF	rgb(0,176,240)
	CA-only	rgb(6,218,147)
	CA-TF	rgb(190,40,229)
	TF-only	rgb(216,118,236)
	Low DNase	rgb(225,225,225)
	Unclassified	rgb(140,140,140)

ENCODE Data Types

Color	Data Type	RGB Code
	DNase Signal / DNase-seq	rgb(6,218,147)
	ATAC-seq	rgb(2,199,185)
	RNA-seq Signal / total RNA-seq	rgb(0,170,0)
	long read RNA-seq	rgb(0,102,0)
	RAMPAGE Peaks & Signal	rgb(214,66,202)
	Conservation	rgb(153,153,153)
	Genes	rgb(0,0,0)
	TF ChIP-seq	rgb(18,98,235)
	RBP	rgb(246,136,0)
	Enhancer-Gene Links	rgb(159,104,230)

Histone Marks

Color	Histone Mark	RGB Code
	H3K4me1	rgb(255,223,0)
	H3K4me2	rgb(255,255,128)
	H3K4me3	rgb(255,0,0)
	H3K9ac	rgb(255,121,3)
	H3K27ac	rgb(255,205,0)
	H3K27me3	rgb(174,175,174)
	H3K36me3	rgb(0,128,0)
	H3K9me3	rgb(180,221,228)
	H3K79me2	rgb(0,160,0)
	H4K20me1	rgb(128,0,128)
	H2A.Z	rgb(176,119,0)

15-State ChromHMM

Color	State	Description	RGB Code
	TssA	Active TSS	rgb(255,0,0)
	TssAFlnk1	Flanking active TSS 1	rgb(255,69,0)
	TssAFlnk2	Flanking active TSS 2	rgb(255,69,0)
	Tx1	Transcription 1	rgb(0,128,0)
	Tx2	Transcription 2	rgb(0,128,0)
	Enh	Strong enhancer	rgb(255,223,0)
	EnhWk1	Weak enhancer 1	rgb(255,255,128)
	EnhWk2	Weak enhancer 2	rgb(255,255,128)
	TssBiv	Bivalent TSS	rgb(205,92,92)
	EnhPois1	Poised enhancer 1	rgb(189,183,107)
	EnhPois2	Poised enhancer 2	rgb(189,183,107)
	HetFac	Facultative heterochromatin	rgb(138,43,226)
	HetCons	Constitutive heterochromatin	rgb(75,0,130)
	QuiesG	Quiescent gene	rgb(128,128,128)
	Quies	Quiescent	rgb(220,220,220)

ChIA-PET & Hi-C

Color	Data Type	RGB Code
	ChIA-PET RNAPII	rgb(178,6,0)
	ChIA-PET CTCF	rgb(25,0,166)
	Hi-C	rgb(146,34,176)

Biosample Types (ENCODE4)

Color	Biosample Type	Code
	Tissue	#cd4621
	Primary cell	#f09636
	In vitro derived cell lines	#8e1b96
	Organoids	#f6c543
	Cell line	#3c61c8

MOHD Study Colors

Color	Study/Category	RGB Code
	CCHC	rgb(191,56,49)
	Columbia-CKD	rgb(121,180,240)
	EXPAND-Asthma	rgb(21,152,117)
	LEON	rgb(245,171,84)
	MOM-Health	rgb(205,160,232)
	UIC-DKD	rgb(49,72,125)
	Female	rgb(157,92,163)
	Male	rgb(98,163,92)

DNA Binding Domain Families

Color	Domain Family	Code
	MADS box	#c92c62
	Ets; AT hook	#4a0055
	Nuclear receptor	#230a9a
	TCR/CxC	#b539e9
	T-box	#81a85b
	Ets	#3c8ee2
	IRF	#76c276
	Unknown	#e1e1e1
	GATA	#5cb1c8
	HSF	#459f5e
	bZIP	#20a7ab
	p53	#83ef9e
	CBF/NF-Y	#e75fc0
	EBF1	#fe26b6
	GCM	#4446a5
	ARID/BRIGHT	#0a3f37
	BED ZF	#ae003b
	HMG/Sox	#82d4cf
	Homeodomain; POU	#42cf96
	CUT; Homeodomain	#d86974
	Homeodomain	#618dd7
	E2F	#2d5357
	C2H2 ZF; AT hook	#960c00
	C2H2 ZF	#fa1000
	Forkhead	#c5bb52
	SAND	#d9d24c
	bHLH	#816115
	Prospero	#e31c18
	Homeodomain; Paired box	#754b2e
	TBP	#830991
	C2H2 ZF; Homeodomain	#a32700
	TEA	#b5da88
	Rel	#3d82fb
	Grainyhead	#b8bd61
	DM	#53a7e3
	AP-2	#dbb1ff
	STAT	#d2864f
	CSL	#6541c5
	MBD; AT hook	#5e957b
	SMAD	#7fcb08
	THAP finger	#dab0c5
	Myb/SANT	#4933ac
	Paired box	#66694b
	RFX	#e07194
	MADF	#a18070
	Runt	#684fda
	MBD	#e00690
	CENPB	#3db296
	Unknown/Other	#808080

Calderon Immune Cell Types

Primary Cell Types

Color	Cell Type	Code
	Bulk B	#078fff
	CD8pos T	#ff9900
	Central memory CD8pos T	#e69138
	Effector CD4pos T	#990000
	Effector memory CD8pos T	#f1c232
	Follicular T Helper	#6c4141
	Gamma delta T	#dc5e5e
	Immature NK	#5e957b
	Mature NK	#008000
	Mem B	#1155cc
	Memory NK	#93c47d
	Memory Teffs	#cc4125
	Memory Tregs	#770000
	Monocytes	#d043ff
	Myeloid DCs	#a64d79
	Naive B	#073763
	Naive CD8 T	#f6b26b
	Naive Teffs	#ea9999
	Naive Tregs	#e06666
	Plasmablasts	#1606f7
	Regulatory T	#cc0000
	Th17 precursors	#ba1818
	Th1 precursors	#ff3535
	Th2 precursors	#c93232
	pDCs	#741b47

Progenitor Cell Types

Color	Cell Type	Code
	CMP (Common Myeloid Progenitors)	#d3b2ce
	LMP (Lymphoid Primed Multipotent Progenitor)	#c1d3ba
	GMP (Granulocyte-monocyte progenitors)	#865695
	CLP (Common Lymphoid Progenitors)	#d5c8ac
	HSC (Hematopoietic Stem Cells)	#595959
	MEP (Megakaryocyte-Erythroid Progenitors)	#b8a0cb
	MPP (Multipotent Progenitors)	#9e9e9e
	Ery (Erythroblasts)	#684fda

Category Colors

Color	Category	Code
	B Cells	#0000ff
	CD4+ T Cells	#980000
	CD8+ T Cells	#ff9900
	Bulk T Cells	#ff0000
	gd Tcells	#fa0056
	NK Cells	#38761d
	Myeloid Cells	#9900ff
	Progenitors	#666666
	Leukemia	#25e6c9

Leukemia Types

Color	Cell Type	Code
	pre-Hematopoetic Leukemic Stem Cell	#25e6c9
	Leukemic Stem Cells	#1ab19a
	Leukemia Blast Cells	#107263

BLUEPRINT Cell Types

Color	Cell Type	Code
	osteoclast	#999999
	Burkitt Lymphoma	#8e7cc3
	CD14-positive CD16-negative classical monocyte	#6aa84f
	Acute Myeloid Leukemia - SAHA	#85200c
	Activated B-Cell-Like Diffuse Large B-Cell Lymphoma	#b45f06
	Acute Lymphocytic Leukemia	#b17d34
	Multiple Myeloma	#e69138
	monocyte - RPMI T 4hrs	#93c47d
	mature neutrophil - G-CSF Dex	#45818e
	Acute Myeloid Leukemia	#eb00c3
	monocyte - Attached T 1hr	#74a55f
	CD3-positive CD4-positive CD8-positive double positive thymocyte	#990000
	mature neutrophil	#568994
	Acute Promyelocytic Leukemia	#e43677
	neutrophilic metamyelocyte	#134f5c
	macrophage - T 6days untreated	#6fa8dc
	effector memory CD8-positive alpha-beta T cell	#ad0c0c
	inflammatory macrophage	#5791c5
	mature eosinophil	#674ea7
	band form neutrophil	#196575
	segmented neutrophil of bone marrow	#0e6577
	plasma cell	#cc0000
	CD34-negative CD41-positive CD42-positive megakaryocyte cell	#674ea7
	immature conventional dendritic cell	#0c343d
	macrophage	#5791c5
	germinal center B cell	#cc0000
	Lymphoma Follicular	#a54c1d
	cytotoxic CD56-dim natural killer cell	#4c1130
	naive B cell	#dd0000
	unswitched memory B cell	#dd0000
	central memory CD4-positive alpha-beta T cell	#990000
	CD4-positive alpha-beta thymocyte	#990000
	Germinal Center B-Cell-Like DLBCL	#b45f06
	alternatively activated macrophage	#5791c5
	endothelial cell of umbilical vein resting	#660000
	endothelial cell of umbilical vein proliferating	#660000
	class switched memory B cell	#dd0000
	mature conventional dendritic cell	#0c343d
	CD38-negative naive B cell	#cc0000
	conventional dendritic cell	#0c343d
	mesenchymal stem cell of the bone marrow	#666666
	CD4-positive alpha-beta T cell	#990000
	CD8-positive alpha-beta T cell	#990000
	adult endothelial progenitor cell	#660000
	Chronic Lymphocytic Leukemia	#b45f06
	erythroblast	#c27ba0

BICCN Single-Cell (Brain) - Cell Classes

Color	Cell Class	Code
	GABA - GABAergic neurons	#3191ed
	GLUT - Glutamatergic neurons	#cb6751
	NonN - Non-neurons	#da8dc9

GABAergic Subclasses

Color	Subclass	Code
	BFEXA - Basal forebrain/extended amygdala	#5dc75d
	BNGA - Basal nuclei	#539e51
	CBGA - Cerebellum GABAergic-like	#7fbb7a
	CNGA - Cerebral nuclei	#23832c
	FOXP2 - FOXP2+ cerebral nuclei	#46e176
	LAMP5-1 - LAMP5+	#00ce80
	LAMP5-2 - LAMP5+ with LHX6+	#70a47c
	MBGA - Midbrain	#8fd69e
	MSN - Medium spiny neurons	#64d8cd
	PVALB - PVALB+	#019c99
	PV ChCs - PVALB+ chandelier cells	#03afcf
	SIGA - Inferior colliculus IC	#00d1f9
	SNCG - SNCG+	#00bcfa
	SST CHODL - SST+ with CHODL+	#01a4f1
	SST - SST+	#00609b
	THMGA - Thalamus	#307edc
	VIP - VIP+	#099dff

Glutamatergic Subclasses

Color	Subclass	Code
	AMY - Amygdala	#ec2e82
	CBGRC - Cerebellum granule neurons	#88475c
	CHO - Cholinergic neurons	#bd5378
	L6 CT - L6 corticothalamic projection	#ee7ea2
	L5 ET - Extratelencephalic projecting	#bd7580
	IT-L2/3 - Intratelencephalic L2/3	#ff7985
	IT-L3/4 - Intratelencephalic L3/4	#e83038
	IT-L4 - Intratelencephalic L4	#ff7560
	IT-L4/5 - Intratelencephalic L4/5	#ae001d
	IT-L5 - Intratelencephalic L5	#ffa179
	IT-L6-1 - Intratelencephalic L6 subclass 1	#b65f00
	IT-L6-2 - Intratelencephalic L6 subclass 2	#f4bc71
	IT-V1C - Primary visual cortex	#b18000
	L6B - Cortical layer 6B	#674f10
	L5/6 NP - Near-projecting neurons	#959700
	PRERC - Piriform/entorhinal cortex	#8fb541
	SUB - Subicular cortex	#c0ce72

Non-neuron Subclasses

Color	Subclass	Code
	ACBGM - Bergmann glia	#2171cb
	ASCNT - Non-telencephalon astrocytes	#6f8fd2
	ASCT - Telencephalon astrocytes	#968aff
	EC - Endothelial cells	#7d5d8b
	MGC - Microglia	#773299
	OGC - Oligodendrocytes	#e045c3
	OPC - Oligodendrocyte precursor cells	#ff77b7
	SMC - Vascular smooth muscle cells	#9b556c
	PER - Pericytes-like	#c7006e

PSC Cell Types

Bulk Immune

Color	Cell Type	Code
	lymphoid progenitors	#a64d79
	B cells	#45818e
	B cells (stimulated)	#a2c4c9
	CD4+ T cells	#1f78b4
	CD4+ T cells (stimulated)	#6d9eeb
	CD8+ T cells	#aa7fee
	CD8+ T cells (stimulated)	#cab2d6
	Natural Killers	#741b47
	Macrophages/Monocytes	#6aa84f
	Dendritic Cells	#3cb44b
	Myeloid Progenitors	#76a5af
	Erythroid Cells	#a61c00
	Cholangiocytes	#c2a17b
	Multipotent Progenitors	#999999

Single Cell

Color	Cell Type	Code
	B	#45818e
	T	#1f78b4
	macrophage	#6aa84f
	erythroid	#a61c00
	adipocyte	#d9d24c
	astrocyte	#e69138
	endocrine	#6fa8dc
	endothelium	#e06666
	epithelium	#c27ba0
	exocrine	#344b79
	fibroblast	#e6ab02
	hepatocyte	#66c2a5
	keratinocyte	#fdbf6f
	mast	#a6d854
	mesothelium	#666666
	stem	#b3b3b3
	myocyte	#a64d79
	neuron	#b45f06
	oligodendrocyte	#ddc4fb
	paneth	#b6d7a8
	pericyte	#795ca6
	pigment	#255ed1
	schwann	#a3c2fa
	cholangiocyte	#c2a17b
	glia	#eb9f81

PRO-seq / PRO-cap

Color	Data Type	RGB Code
	PRO-cap	rgb(246,136,0)
	PRO-seq	rgb(180,95,6)
	Bru-seq	rgb(214,66,202)